MLOC_20723 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains33.944325.298926.627.2852
LEAShoots from the seedlings (10 cm shoot stage)25.934314.73333.044818.7688
INF1Young developing inflorescences (5mm)19.410319.033520.799617.5078
INF2Developing inflorescences (1-1.5 cm)12.520716.054916.942417.3468
ROORoots from the seedlings (10 cm shoot stage)55.695537.45425.047639.4968
NODDeveloping tillers at six leaf stage, 3rd internode12.494917.846610.88839.7212
CAR5Developing grain, bracts removed (5 DPA)115.81294.925100.485105.487
CAR15Developing grain, bracts removed (15 DPA)10.914111.008310.382727.3636



CDS Structure of MLOC_20723






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20723.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252966.1NoneNoneNoneNone
MLOC_20723.1CUST_1913_PI427708080AvailableAvailablecontig_159151 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g47820.1 +2 0.0 727 363/445 (82%) 13111.m04772 protein glucan endo-1,3-beta-glucosidase precursor, putative, expressed
TAIR PP10 AT3G55430.1 +2 2e-144 431 223/433 (52%) O-Glycosyl hydrolases family 17 protein | chr3:20549806-20552004 REVERSE LENGTH=449