- Predicted Gene MLOC_20697
MLOC_20697 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 4.2499 | 2.6865 | 3.01933 | 2.98686 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 2.29031 | 1.72232 | 1.38746 | 1.46296 |
INF1 | Young developing inflorescences (5mm) | 7.08682 | 7.88717 | 7.80333 | 6.36154 |
INF2 | Developing inflorescences (1-1.5 cm) | 4.00232 | 3.87662 | 3.48232 | 4.15832 |
ROO | Roots from the seedlings (10 cm shoot stage) | 2.79776 | 3.73158 | 3.61214 | 3.72249 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.807437 | 1.21158 | 1.90595 | 3.60746 |
CAR5 | Developing grain, bracts removed (5 DPA) | 3.30601 | 4.14407 | 4.37196 | 3.72149 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.02435 | 1.50586 | 1.38383 | 3.08746 |
CDS Structure of MLOC_20697
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_20697.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os05g43680.1 |
-1 |
3e-56 |
186 |
110/122 (90%) |
13105.m04604 protein expressed protein |
TAIR PP10 |
AT1G26470.1 |
-1 |
8e-41 |
144 |
86/125 (69%) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, H4/H2A histone acetyltransferase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CT20 (InterPro:IPR012423); Has 60 Blast hits to 60 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 2; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:9155134-9156036 FORWARD LENGTH=133 |