MLOC_20697 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.24992.68653.019332.98686
LEAShoots from the seedlings (10 cm shoot stage)2.290311.722321.387461.46296
INF1Young developing inflorescences (5mm)7.086827.887177.803336.36154
INF2Developing inflorescences (1-1.5 cm)4.002323.876623.482324.15832
ROORoots from the seedlings (10 cm shoot stage)2.797763.731583.612143.72249
NODDeveloping tillers at six leaf stage, 3rd internode0.8074371.211581.905953.60746
CAR5Developing grain, bracts removed (5 DPA)3.306014.144074.371963.72149
CAR15Developing grain, bracts removed (15 DPA)1.024351.505861.383833.08746



CDS Structure of MLOC_20697






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20697.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251125.1NoneNoneNoneNone
MLOC_20697.1CUST_1912_PI427708080AvailableAvailablecontig_159139 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g43680.1 -1 3e-56 186 110/122 (90%) 13105.m04604 protein expressed protein
TAIR PP10 AT1G26470.1 -1 8e-41 144 86/125 (69%) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, H4/H2A histone acetyltransferase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CT20 (InterPro:IPR012423); Has 60 Blast hits to 60 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 2; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:9155134-9156036 FORWARD LENGTH=133