MLOC_20685 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains26.702828.15426.349330.0298
LEAShoots from the seedlings (10 cm shoot stage)13.7916.535912.893412.4628
INF1Young developing inflorescences (5mm)55.78252.921353.959452.0364
INF2Developing inflorescences (1-1.5 cm)52.339149.428750.021662.1483
ROORoots from the seedlings (10 cm shoot stage)21.8420.033632.164227.4227
NODDeveloping tillers at six leaf stage, 3rd internode13.1624.32826.6299214.1201
CAR5Developing grain, bracts removed (5 DPA)22.080223.611822.663824.9564
CAR15Developing grain, bracts removed (15 DPA)5.140725.071494.9131213.4989



CDS Structure of MLOC_20685






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20685.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20685.1CUST_11665_PI427708083AvailableAvailablecontig_1591335 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g55740.1 -2 8e-15 73 47/73 (64%) 13101.m05879 protein OsRhmbd4 - Putative Rhomboid homologue, expressed
TAIR PP10None-----