MLOC_20613 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains84.638265.207157.209462.8764
LEAShoots from the seedlings (10 cm shoot stage)28.1862.924754.19469.6073
INF1Young developing inflorescences (5mm)160.053150.995110.438117.003
INF2Developing inflorescences (1-1.5 cm)86.9661139.223111.476123.429
ROORoots from the seedlings (10 cm shoot stage)31.919445.512861.49141.947
NODDeveloping tillers at six leaf stage, 3rd internode2.027341.031690.3230371.80833
CAR5Developing grain, bracts removed (5 DPA)65.910979.470964.231266.7308
CAR15Developing grain, bracts removed (15 DPA)4.879492.39463.523438.24574



CDS Structure of MLOC_20613






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20613.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20613.1NoneAvailableAvailablecontig_1590867 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g05730.1 +2 2e-22 91 44/44 (100%) 13111.m00557 protein histone H3, putative, expressed
TAIR PP10 AT5G65360.1 +2 1e-22 91 44/44 (100%) Histone superfamily protein | chr5:26120099-26120509 REVERSE LENGTH=136