MLOC_20605 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.97713.61515.42829.23097
LEAShoots from the seedlings (10 cm shoot stage)16.710713.053413.36639.74332
INF1Young developing inflorescences (5mm)17.55616.818620.638911.0127
INF2Developing inflorescences (1-1.5 cm)16.598416.833115.249914.0538
ROORoots from the seedlings (10 cm shoot stage)10.489314.170812.010511.7971
NODDeveloping tillers at six leaf stage, 3rd internode17.009513.915320.665537.1223
CAR5Developing grain, bracts removed (5 DPA)17.141917.529819.806113.2037
CAR15Developing grain, bracts removed (15 DPA)10.340310.472312.588617.7596



CDS Structure of MLOC_20605






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20605.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20605.1CUST_11661_PI427708083AvailableAvailablecontig_159079 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g30020.2 -3 2e-158 472 230/258 (89%) 13112.m03058 protein cyclin-T1-4, putative, expressed
TAIR PP10 AT4G19600.1 -3 2e-137 417 200/227 (88%) | Symbols: CYCT1;4 | Cyclin family protein | chr4:10673619-10676532 FORWARD LENGTH=541