MLOC_20559 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1335650.1792610.05098330.125869
LEAShoots from the seedlings (10 cm shoot stage)0.4232980.6903930.7958780.454692
INF1Young developing inflorescences (5mm)0.2220680.3543650.1211380.192429
INF2Developing inflorescences (1-1.5 cm)0.08979770.1479590.1157730.12019
ROORoots from the seedlings (10 cm shoot stage)00.13504900.288429
NODDeveloping tillers at six leaf stage, 3rd internode0.02824270.08834320.01144730.183117
CAR5Developing grain, bracts removed (5 DPA)0.3893030.1825540.1615660.212398
CAR15Developing grain, bracts removed (15 DPA)0.03444860.03814180.1503460.140482



CDS Structure of MLOC_20559






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20559.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20559.1CUST_2949_PI427708083AvailableAvailablecontig_159053 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g39020.1 -1 7e-16 73 67/256 (26%) 13106.m04044 protein retrotransposon protein, putative, unclassified
TAIR PP10None-----