MLOC_20558 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains47.190569.217355.138576.6265
LEAShoots from the seedlings (10 cm shoot stage)44.942624.166921.840327.0224
INF1Young developing inflorescences (5mm)23.211520.7622.116222.7014
INF2Developing inflorescences (1-1.5 cm)20.185818.612319.91726.1819
ROORoots from the seedlings (10 cm shoot stage)55.921345.204463.432571.4621
NODDeveloping tillers at six leaf stage, 3rd internode128.572124.97778.8731363.328
CAR5Developing grain, bracts removed (5 DPA)40.639654.180233.081554.3829
CAR15Developing grain, bracts removed (15 DPA)6.667863.026584.1562312.8142



CDS Structure of MLOC_20558






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20558.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20558.1NoneAvailableAvailablecontig_1590527 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g01300.3 -2 6e-14 71 71/93 (76%) 13104.m00040 protein OsRhmbd10 - Putative Rhomboid homologue, expressed
TAIR PP10None-----