- Predicted Gene MLOC_20557
MLOC_20557 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 0.166368 | 0.0469871 | 0.0682574 | 0.0791845 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 3.796 | 12.77 | 16.6659 | 7.73158 |
INF1 | Young developing inflorescences (5mm) | 0 | 0 | 0 | 0 |
INF2 | Developing inflorescences (1-1.5 cm) | 0 | 0 | 0 | 0 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0 | 0.106434 | 0.143906 | 0.14223 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0 | 0.106302 | 0.127497 | 0.459513 |
CAR5 | Developing grain, bracts removed (5 DPA) | 0 | 0 | 0 | 0 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0 | 0 | 0 | 0 |
CDS Structure of MLOC_20557
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_20557.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g49920.1 |
+3 |
5e-99 |
309 |
149/191 (78%) |
13102.m05669 protein 3-ketoacyl-CoA synthase, putative, expressed |
TAIR PP10 |
AT1G68530.1 |
+3 |
4e-85 |
272 |
130/191 (68%) |
| Symbols: CUT1, POP1, CER6, G2, KCS6 | 3-ketoacyl-CoA synthase 6 | chr1:25712881-25714733 REVERSE LENGTH=497 |