MLOC_20557 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1663680.04698710.06825740.0791845
LEAShoots from the seedlings (10 cm shoot stage)3.79612.7716.66597.73158
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)00.1064340.1439060.14223
NODDeveloping tillers at six leaf stage, 3rd internode00.1063020.1274970.459513
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_20557






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20557.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20557.1CUST_2948_PI427708083AvailableAvailablecontig_1590520 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g49920.1 +3 5e-99 309 149/191 (78%) 13102.m05669 protein 3-ketoacyl-CoA synthase, putative, expressed
TAIR PP10 AT1G68530.1 +3 4e-85 272 130/191 (68%) | Symbols: CUT1, POP1, CER6, G2, KCS6 | 3-ketoacyl-CoA synthase 6 | chr1:25712881-25714733 REVERSE LENGTH=497