MLOC_20551 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.7542320.4027290.1050560.494249
LEAShoots from the seedlings (10 cm shoot stage)00.1278090.1974040.243864
INF1Young developing inflorescences (5mm)0.1424440.5602950.3521160.317235
INF2Developing inflorescences (1-1.5 cm)0.5606010.5497280.2333430.591278
ROORoots from the seedlings (10 cm shoot stage)00.21059600.707451
NODDeveloping tillers at six leaf stage, 3rd internode00.01581990.05795390.144547
CAR5Developing grain, bracts removed (5 DPA)0.13610.3054670.148340.228918
CAR15Developing grain, bracts removed (15 DPA)0.145472000.544182



CDS Structure of MLOC_20551






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20551.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20551.1CUST_2947_PI427708083AvailableAvailablecontig_159047 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g16950.5 -2 2e-89 270 157/233 (67%) 13107.m01773 protein Mak16 protein domain containing protein, expressed
TAIR PP10 AT1G23280.1 -2 7e-68 214 103/148 (70%) MAK16 protein-related | chr1:8260865-8262650 REVERSE LENGTH=303