MLOC_20540 FPKM values

FPKM by TreatmentFPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.


Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.883762.664981.864530
LEAShoots from the seedlings (10 cm shoot stage)7.052314.238638.300170
INF1Young developing inflorescences (5mm)13.11786.751565.278370
INF2Developing inflorescences (1-1.5 cm)0.28668501.072160
ROORoots from the seedlings (10 cm shoot stage)32.62396.826356.856420
NODDeveloping tillers at six leaf stage, 3rd internode17.20816.1426235.45430
CAR5Developing grain, bracts removed (5 DPA)4.67712.662632.187230
CAR15Developing grain, bracts removed (15 DPA)0.3648661.187120.9588520



CDS Structure of MLOC_20540






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by AK361755
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK361755CUST_20421_PI427708080NoneNoneNone
MLOC_20540.1NoneAvailableNonecontig_1590432 (Not mapped)
MLOC_35717.1NoneAvailableNonecontig_2518818 (Not mapped)
MLOC_42301.1NoneAvailableNonecontig_263633 (Mapped)
MLOC_49185.1NoneAvailableNonecontig_337354 (Not mapped)
MLOC_70804.1NoneAvailableAvailablecontig_58579 (Mapped)
MLOC_9411.1NoneAvailableNonecontig_1520811 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6None-----
TAIR PP10None-----