MLOC_20533 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains57.947442.083340.452244.034
LEAShoots from the seedlings (10 cm shoot stage)33.74720.457633.20122.5576
INF1Young developing inflorescences (5mm)58.243255.599951.304345.3377
INF2Developing inflorescences (1-1.5 cm)51.869349.894847.617554.2258
ROORoots from the seedlings (10 cm shoot stage)52.358548.033735.839850.2131
NODDeveloping tillers at six leaf stage, 3rd internode8.5971611.411620.606137.2598
CAR5Developing grain, bracts removed (5 DPA)60.623858.611161.422657.9508
CAR15Developing grain, bracts removed (15 DPA)17.92318.146314.132939.9581



CDS Structure of MLOC_20533






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20533.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362477NoneNoneNoneNone
MLOC_20533.1CUST_1905_PI427708080AvailableAvailablecontig_159038 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g49150.1 -3 0.0 825 435/518 (84%) 13105.m05254 protein eukaryotic translation initiation factor 3 subunit D, putative, expressed
TAIR PP10 AT4G20980.4 -3 0.0 660 362/530 (68%) Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) | chr4:11216997-11218772 FORWARD LENGTH=591