- Predicted Gene MLOC_20533
MLOC_20533 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 57.9474 | 42.0833 | 40.4522 | 44.034 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 33.747 | 20.4576 | 33.201 | 22.5576 |
| INF1 | Young developing inflorescences (5mm) | 58.2432 | 55.5999 | 51.3043 | 45.3377 |
| INF2 | Developing inflorescences (1-1.5 cm) | 51.8693 | 49.8948 | 47.6175 | 54.2258 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 52.3585 | 48.0337 | 35.8398 | 50.2131 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 8.59716 | 11.4116 | 20.6061 | 37.2598 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 60.6238 | 58.6111 | 61.4226 | 57.9508 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 17.923 | 18.1463 | 14.1329 | 39.9581 |
CDS Structure of MLOC_20533
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_20533.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os05g49150.1 |
-3 |
0.0 |
825 |
435/518 (84%) |
13105.m05254 protein eukaryotic translation initiation factor 3 subunit D, putative, expressed |
| TAIR PP10 |
AT4G20980.4 |
-3 |
0.0 |
660 |
362/530 (68%) |
Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) | chr4:11216997-11218772 FORWARD LENGTH=591 |