MLOC_20489 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains203.766218.969188.394203.405
LEAShoots from the seedlings (10 cm shoot stage)70.71047.158598.8694723.0356
INF1Young developing inflorescences (5mm)537.108547.885531.122462.178
INF2Developing inflorescences (1-1.5 cm)421.923484.261388.582508.665
ROORoots from the seedlings (10 cm shoot stage)72.125278.6077171.75997.7755
NODDeveloping tillers at six leaf stage, 3rd internode0.6247810.5099680.9768241.37652
CAR5Developing grain, bracts removed (5 DPA)149.466169.524137.174160.995
CAR15Developing grain, bracts removed (15 DPA)8.296524.222487.8397115.6878



CDS Structure of MLOC_20489






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20489.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20489.1NoneAvailableAvailablecontig_1590116 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g37780.1 +3 1e-19 81 39/40 (98%) 13104.m03615 protein histone H3.3a, putative, expressed
TAIR PP10 AT4G40030.2 +3 2e-20 84 41/45 (91%) Histone superfamily protein | chr4:18555840-18556827 REVERSE LENGTH=164