- Predicted Gene MLOC_20487
MLOC_20487 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_20487_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_20487_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 20.0169 | 26.1754 | 24.0045 | 25.8626 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 670.203 | 1369.49 | 1335.48 | 949.818 |
INF1 | Young developing inflorescences (5mm) | 24.8301 | 19.1877 | 20.3916 | 20.297 |
INF2 | Developing inflorescences (1-1.5 cm) | 26.5367 | 28.4825 | 35.0701 | 36.0036 |
ROO | Roots from the seedlings (10 cm shoot stage) | 3.64942 | 10.0518 | 20.4193 | 12.7216 |
NOD | Developing tillers at six leaf stage, 3rd internode | 454.495 | 496.818 | 816.851 | 1605.24 |
CAR5 | Developing grain, bracts removed (5 DPA) | 147.22 | 170.604 | 147.477 | 171.525 |
CAR15 | Developing grain, bracts removed (15 DPA) | 28.7493 | 33.3797 | 26.5844 | 80.2519 |
CDS Structure of MLOC_20487
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_20487.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os06g21590.1 |
+2 |
3e-147 |
423 |
213/234 (91%) |
13106.m02312 protein chlorophyll A-B binding protein, putative, expressed |
TAIR PP10 |
AT3G54890.1 |
+2 |
6e-121 |
355 |
182/227 (80%) |
| Symbols: LHCA1 | photosystem I light harvesting complex gene 1 | chr3:20339706-20340922 REVERSE LENGTH=241 |