MLOC_20487 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains20.016926.175424.004525.8626
LEAShoots from the seedlings (10 cm shoot stage)670.2031369.491335.48949.818
INF1Young developing inflorescences (5mm)24.830119.187720.391620.297
INF2Developing inflorescences (1-1.5 cm)26.536728.482535.070136.0036
ROORoots from the seedlings (10 cm shoot stage)3.6494210.051820.419312.7216
NODDeveloping tillers at six leaf stage, 3rd internode454.495496.818816.8511605.24
CAR5Developing grain, bracts removed (5 DPA)147.22170.604147.477171.525
CAR15Developing grain, bracts removed (15 DPA)28.749333.379726.584480.2519



CDS Structure of MLOC_20487






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20487.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250122.1NoneNoneNoneNone
MLOC_20487.1CUST_1904_PI427708080AvailableAvailablecontig_1590103 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g21590.1 +2 3e-147 423 213/234 (91%) 13106.m02312 protein chlorophyll A-B binding protein, putative, expressed
TAIR PP10 AT3G54890.1 +2 6e-121 355 182/227 (80%) | Symbols: LHCA1 | photosystem I light harvesting complex gene 1 | chr3:20339706-20340922 REVERSE LENGTH=241