MLOC_20424 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.647787.694047.452468.17857
LEAShoots from the seedlings (10 cm shoot stage)8.594642.960313.232554.80717
INF1Young developing inflorescences (5mm)36.444734.256243.655533.6869
INF2Developing inflorescences (1-1.5 cm)54.395752.84255.444961.9235
ROORoots from the seedlings (10 cm shoot stage)2.849725.914775.059637.72942
NODDeveloping tillers at six leaf stage, 3rd internode1.668843.267694.3393713.5122
CAR5Developing grain, bracts removed (5 DPA)26.748826.153627.405327.3931
CAR15Developing grain, bracts removed (15 DPA)12.835912.091711.163228.4615



CDS Structure of MLOC_20424






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20424.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20424.1CUST_9873_PI427708080AvailableAvailablecontig_1589746 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g19040.1 -3 4e-101 317 182/345 (53%) 13112.m02027 protein expressed protein
TAIR PP10 AT1G13030.1 -3 2e-37 144 108/343 (31%) sphere organelles protein-related | chr1:4444284-4447278 REVERSE LENGTH=608