MLOC_20411 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.1421726.999922.935824.0536
LEAShoots from the seedlings (10 cm shoot stage)31.561624.787517.655223.2101
INF1Young developing inflorescences (5mm)43.396442.174341.483938.1112
INF2Developing inflorescences (1-1.5 cm)55.611448.077844.92559.284
ROORoots from the seedlings (10 cm shoot stage)6.3401813.781611.604918.3418
NODDeveloping tillers at six leaf stage, 3rd internode17.804317.352513.368666.5042
CAR5Developing grain, bracts removed (5 DPA)28.891324.149725.777728.4783
CAR15Developing grain, bracts removed (15 DPA)18.62118.240716.655344.915



CDS Structure of MLOC_20411






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20411.7
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20411.7CUST_9872_PI427708080AvailableAvailablecontig_1589662 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g29730.1 +2 2e-39 150 82/123 (67%) 13108.m03072 protein intracellular protein transport protein USO1-related, putative, expressed
TAIR PP10 AT2G46180.1 +2 1e-41 157 127/410 (31%) | Symbols: GC4 | golgin candidate 4 | chr2:18967482-18971260 REVERSE LENGTH=725