MLOC_20390 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.633454.240483.837143.79464
LEAShoots from the seedlings (10 cm shoot stage)2.401690.8101540.4287991.09218
INF1Young developing inflorescences (5mm)23.121823.917819.883919.1504
INF2Developing inflorescences (1-1.5 cm)16.532419.004416.976919.2883
ROORoots from the seedlings (10 cm shoot stage)0.8994312.096491.879152.42623
NODDeveloping tillers at six leaf stage, 3rd internode0.1058510.1598920.1382010.544227
CAR5Developing grain, bracts removed (5 DPA)4.581554.278874.698374.35858
CAR15Developing grain, bracts removed (15 DPA)0.3955490.4969070.7471841.10967



CDS Structure of MLOC_20390






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20390.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20390.2CUST_9869_PI427708080AvailableAvailablecontig_158953 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g48360.1 -3 0.0 1332 662/898 (74%) 13107.m05172 protein helicase conserved C-terminal domain containing protein, expressed
TAIR PP10 AT1G31360.1 -3 7e-89 303 172/422 (41%) | Symbols: RECQL2, ATRECQ2, MED34 | RECQ helicase L2 | chr1:11232422-11237412 FORWARD LENGTH=705