MLOC_20381 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.773219.349520.346614.3606
LEAShoots from the seedlings (10 cm shoot stage)30.939217.529320.372817.5085
INF1Young developing inflorescences (5mm)15.937316.386316.009211.3401
INF2Developing inflorescences (1-1.5 cm)15.171415.570714.947214.0455
ROORoots from the seedlings (10 cm shoot stage)17.13323.454416.468320.8927
NODDeveloping tillers at six leaf stage, 3rd internode31.229522.87923.784665.1767
CAR5Developing grain, bracts removed (5 DPA)29.386627.83833.493923.531
CAR15Developing grain, bracts removed (15 DPA)28.96225.899127.005552.7869



CDS Structure of MLOC_20381






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20381.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20381.2CUST_9867_PI427708080AvailableAvailablecontig_158947 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g56630.1 -3 0.0 1030 552/619 (89%) 13101.m05999 protein dymeclin, putative, expressed
TAIR PP10 AT1G04200.1 -3 0.0 659 377/621 (61%) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dymeclin (InterPro:IPR019142); Has 395 Blast hits to 389 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 262; Fungi - 21; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr1:1109676-1113875 FORWARD LENGTH=732