MLOC_20377 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains20.470137.580538.030630.9576
LEAShoots from the seedlings (10 cm shoot stage)33.546528.28636.406127.5542
INF1Young developing inflorescences (5mm)38.266339.93443.479531.4612
INF2Developing inflorescences (1-1.5 cm)53.1454.286651.715653.9994
ROORoots from the seedlings (10 cm shoot stage)35.242556.814850.927461.4613
NODDeveloping tillers at six leaf stage, 3rd internode36.207934.772828.5752110.566
CAR5Developing grain, bracts removed (5 DPA)35.839732.450534.727430.5716
CAR15Developing grain, bracts removed (15 DPA)75.791262.411870.7302143.994



CDS Structure of MLOC_20377






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20377.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367931NoneNoneNoneNone
MLOC_20377.3CUST_1901_PI427708080AvailableAvailablecontig_158944 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g42850.2 +3 0.0 1473 751/1013 (74%) 13101.m04412 protein ThiF family domain containing protein, putative, expressed
TAIR PP10 AT5G45900.1 +3 0.0 551 327/679 (48%) | Symbols: APG7, ATAPG7, ATG7, ATATG7 | ThiF family protein | chr5:18615304-18618436 FORWARD LENGTH=697