- Predicted Gene MLOC_20377
MLOC_20377 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 20.4701 | 37.5805 | 38.0306 | 30.9576 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 33.5465 | 28.286 | 36.4061 | 27.5542 |
INF1 | Young developing inflorescences (5mm) | 38.2663 | 39.934 | 43.4795 | 31.4612 |
INF2 | Developing inflorescences (1-1.5 cm) | 53.14 | 54.2866 | 51.7156 | 53.9994 |
ROO | Roots from the seedlings (10 cm shoot stage) | 35.2425 | 56.8148 | 50.9274 | 61.4613 |
NOD | Developing tillers at six leaf stage, 3rd internode | 36.2079 | 34.7728 | 28.5752 | 110.566 |
CAR5 | Developing grain, bracts removed (5 DPA) | 35.8397 | 32.4505 | 34.7274 | 30.5716 |
CAR15 | Developing grain, bracts removed (15 DPA) | 75.7912 | 62.4118 | 70.7302 | 143.994 |
CDS Structure of MLOC_20377
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_20377.3
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g42850.2 |
+3 |
0.0 |
1473 |
751/1013 (74%) |
13101.m04412 protein ThiF family domain containing protein, putative, expressed |
TAIR PP10 |
AT5G45900.1 |
+3 |
0.0 |
551 |
327/679 (48%) |
| Symbols: APG7, ATAPG7, ATG7, ATATG7 | ThiF family protein | chr5:18615304-18618436 FORWARD LENGTH=697 |