MLOC_20334 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.312536.654316.781865.57154
LEAShoots from the seedlings (10 cm shoot stage)5.452513.563582.575432.92525
INF1Young developing inflorescences (5mm)5.991999.4358510.64795.45667
INF2Developing inflorescences (1-1.5 cm)10.41459.6222911.79429.08545
ROORoots from the seedlings (10 cm shoot stage)6.385357.352246.081696.7732
NODDeveloping tillers at six leaf stage, 3rd internode10.80710.115114.873930.0307
CAR5Developing grain, bracts removed (5 DPA)5.865455.826365.059794.21081
CAR15Developing grain, bracts removed (15 DPA)0.6956491.087331.301911.61269



CDS Structure of MLOC_20334






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20334.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20334.2CUST_11647_PI427708083AvailableAvailablecontig_158924 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g74330.1 -1 7e-40 150 69/79 (87%) 13101.m08124 protein pectinacetylesterase domain containing protein, expressed
TAIR PP10 AT5G23870.1 -1 3e-19 89 40/82 (49%) Pectinacetylesterase family protein | chr5:8046309-8049999 REVERSE LENGTH=415