MLOC_20314 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.021120.4536010.5141850.621438
LEAShoots from the seedlings (10 cm shoot stage)0.5328610.5861070.6110330.483157
INF1Young developing inflorescences (5mm)0.8395371.119131.402560.956269
INF2Developing inflorescences (1-1.5 cm)2.554212.175961.554572.38715
ROORoots from the seedlings (10 cm shoot stage)1.057151.023370.7865971.21091
NODDeveloping tillers at six leaf stage, 3rd internode1.392753.087233.153299.23899
CAR5Developing grain, bracts removed (5 DPA)00.04089520.04545220.0455934
CAR15Developing grain, bracts removed (15 DPA)0.07228880.124330.1055770.249399



CDS Structure of MLOC_20314






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20314.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20314.2CUST_2918_PI427708083AvailableAvailablecontig_158914 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g29470.1 -2 2e-42 151 85/105 (81%) 13103.m03388 protein transcription initiation factor IID, putative, expressed
TAIR PP10 AT1G54140.1 -2 1e-27 108 52/82 (63%) | Symbols: TAFII21, TAF9 | TATA binding protein associated factor 21kDa subunit | chr1:20214076-20214869 REVERSE LENGTH=183