MLOC_20309 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains28.255311.767415.345314.7151
LEAShoots from the seedlings (10 cm shoot stage)13.63612.141082.559975.38988
INF1Young developing inflorescences (5mm)34.371437.572439.315726.6641
INF2Developing inflorescences (1-1.5 cm)25.736832.325627.19126.243
ROORoots from the seedlings (10 cm shoot stage)21.0519.4875514.767711.3617
NODDeveloping tillers at six leaf stage, 3rd internode2.381712.141011.752435.48932
CAR5Developing grain, bracts removed (5 DPA)9.9014611.429412.10088.77932
CAR15Developing grain, bracts removed (15 DPA)1.516311.244111.175022.81987



CDS Structure of MLOC_20309






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20309.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20309.1CUST_11645_PI427708083AvailableAvailablecontig_1589115 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g38560.1 -1 2e-18 81 40/41 (98%) 13105.m04047 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative
TAIR PP10 AT3G09480.1 -1 3e-18 80 39/41 (95%) Histone superfamily protein | chr3:2914890-2915270 REVERSE LENGTH=126