MLOC_20302 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains35.439222.208233.610920.8325
LEAShoots from the seedlings (10 cm shoot stage)15.034512.708520.762210.1384
INF1Young developing inflorescences (5mm)14.245913.977416.32698.24994
INF2Developing inflorescences (1-1.5 cm)13.022713.782714.627710.7655
ROORoots from the seedlings (10 cm shoot stage)20.727921.785724.82218.0629
NODDeveloping tillers at six leaf stage, 3rd internode15.80912.178114.099431.2262
CAR5Developing grain, bracts removed (5 DPA)12.264213.472212.42238.5197
CAR15Developing grain, bracts removed (15 DPA)5.381114.325975.520367.55831



CDS Structure of MLOC_20302






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20302.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20302.1CUST_11644_PI427708083AvailableAvailablecontig_158907 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g51700.3 +1 9e-55 183 90/97 (93%) 13101.m05397 protein ras-related protein, putative, expressed
TAIR PP10 AT4G09720.2 +1 1e-43 152 71/97 (73%) | Symbols: ATRABG3A, RABG3A | RAB GTPase homolog G3A | chr4:6133405-6134959 FORWARD LENGTH=172