MLOC_20294 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.208132.73592.241792.34025
LEAShoots from the seedlings (10 cm shoot stage)3.253021.492182.6741.94008
INF1Young developing inflorescences (5mm)2.506212.642563.609061.93395
INF2Developing inflorescences (1-1.5 cm)1.547061.777762.355131.701
ROORoots from the seedlings (10 cm shoot stage)4.448543.517222.018883.62495
NODDeveloping tillers at six leaf stage, 3rd internode2.689143.102443.126959.29637
CAR5Developing grain, bracts removed (5 DPA)2.189462.573342.322921.91658
CAR15Developing grain, bracts removed (15 DPA)0.9240820.9410830.7158211.6565



CDS Structure of MLOC_20294






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20294.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20294.1CUST_11643_PI427708083AvailableAvailablecontig_1588991 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g32660.1 -1 2e-48 177 88/117 (75%) 13105.m03367 protein leucine-rich repeat family protein, putative, expressed
TAIR PP10 AT3G05990.1 -1 1e-35 139 60/115 (52%) Leucine-rich repeat (LRR) family protein | chr3:1797116-1799732 REVERSE LENGTH=517