MLOC_20236 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains74.62346.093359.212971.2258
LEAShoots from the seedlings (10 cm shoot stage)41.647823.731129.587933.1478
INF1Young developing inflorescences (5mm)65.847364.21273.689974.5856
INF2Developing inflorescences (1-1.5 cm)61.187851.263748.212374.2341
ROORoots from the seedlings (10 cm shoot stage)60.556241.736477.199181.3255
NODDeveloping tillers at six leaf stage, 3rd internode11.47497.9052516.962544.2048
CAR5Developing grain, bracts removed (5 DPA)51.051344.076855.856363.7644
CAR15Developing grain, bracts removed (15 DPA)21.778518.627615.665455.158



CDS Structure of MLOC_20236






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20236.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20236.1NoneAvailableAvailablecontig_1588706 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g39500.1 -1 9e-36 120 63/69 (91%) 13109.m03961 protein ubiquitin fusion protein, putative, expressed
TAIR PP10 AT3G52590.1 -1 4e-36 120 63/69 (91%) | Symbols: UBQ1, EMB2167, ERD16, HAP4 | ubiquitin extension protein 1 | chr3:19505668-19506681 FORWARD LENGTH=128