MLOC_20227 FPKM values

FPKM by TreatmentFPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.


Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains38.522129.957930.40680
LEAShoots from the seedlings (10 cm shoot stage)19.096616.804822.8350
INF1Young developing inflorescences (5mm)16.561218.253624.4280
INF2Developing inflorescences (1-1.5 cm)12.290210.455812.24320
ROORoots from the seedlings (10 cm shoot stage)45.500128.972827.72280
NODDeveloping tillers at six leaf stage, 3rd internode18.684822.12125.67540
CAR5Developing grain, bracts removed (5 DPA)19.820621.872320.50850
CAR15Developing grain, bracts removed (15 DPA)13.640313.839312.11720



CDS Structure of MLOC_20227






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by AK366954
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366954CUST_21380_PI427708080NoneNoneNone
MLOC_20227.1NoneAvailableNonecontig_1588655 (Not mapped)
MLOC_26438.1NoneAvailableNonecontig_1755646 (Not mapped)
MLOC_31239.1NoneAvailableNonecontig_2169664 (Not mapped)
MLOC_32199.1NoneAvailableNonecontig_226175 (Not mapped)
MLOC_52626.1NoneAvailableAvailablecontig_37668 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6None-----
TAIR PP10None-----