MLOC_20210 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.7093.321273.234242.70865
LEAShoots from the seedlings (10 cm shoot stage)7.332148.440398.468866.43179
INF1Young developing inflorescences (5mm)3.877165.043165.870423.85362
INF2Developing inflorescences (1-1.5 cm)3.735784.12014.15134.1961
ROORoots from the seedlings (10 cm shoot stage)3.542264.561182.587344.72105
NODDeveloping tillers at six leaf stage, 3rd internode6.179798.36069.217625.5794
CAR5Developing grain, bracts removed (5 DPA)4.784264.723834.759454.40871
CAR15Developing grain, bracts removed (15 DPA)0.8405171.046470.4995181.86786



CDS Structure of MLOC_20210






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20210.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362563NoneNoneNoneNone
MLOC_20210.1CUST_1896_PI427708080AvailableAvailablecontig_158854 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g02780.1 +2 0.0 935 530/761 (70%) 13107.m00206 protein STE_MEKK_ste11_MAP3K.20 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
TAIR PP10 AT5G66850.1 +2 4e-141 444 269/569 (47%) | Symbols: MAPKKK5 | mitogen-activated protein kinase kinase kinase 5 | chr5:26695965-26699159 REVERSE LENGTH=716