- Predicted Gene MLOC_20190
MLOC_20190 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 175.399 | 151.803 | 153.199 | 173.557 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 306.418 | 519.533 | 546.8 | 420.928 |
| INF1 | Young developing inflorescences (5mm) | 77.3773 | 83.5821 | 77.7615 | 73.026 |
| INF2 | Developing inflorescences (1-1.5 cm) | 49.3596 | 60.088 | 52.6788 | 64.6525 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 178.665 | 138.4 | 114.818 | 187.007 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 202.547 | 249.549 | 259.693 | 860.581 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 221.275 | 229.211 | 252.105 | 247.156 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 51.0652 | 53.307 | 53.1818 | 129.751 |
CDS Structure of MLOC_20190
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_20190.3
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os06g04270.1 |
+2 |
0.0 |
1204 |
576/632 (91%) |
13106.m00379 protein transketolase, chloroplast precursor, putative, expressed |
| TAIR PP10 |
AT3G60750.1 |
+2 |
0.0 |
1128 |
540/631 (86%) |
Transketolase | chr3:22454004-22456824 FORWARD LENGTH=741 |
