MLOC_20163 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains65.276564.191161.107759.8567
LEAShoots from the seedlings (10 cm shoot stage)60.907945.230831.505835.6572
INF1Young developing inflorescences (5mm)34.604437.116429.683627.0009
INF2Developing inflorescences (1-1.5 cm)34.205333.075143.081135.8973
ROORoots from the seedlings (10 cm shoot stage)57.005690.317755.56682.6042
NODDeveloping tillers at six leaf stage, 3rd internode11.08027.39454.572217.6562
CAR5Developing grain, bracts removed (5 DPA)46.279941.27240.408838.0514
CAR15Developing grain, bracts removed (15 DPA)36.487532.882229.858476.8035



CDS Structure of MLOC_20163






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20163.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20163.2CUST_9852_PI427708080AvailableAvailablecontig_158835 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g54730.1 +1 0.0 746 403/486 (83%) 13102.m06266 protein transmembrane amino acid transporter protein, putative, expressed
TAIR PP10 AT2G41190.1 +1 0.0 579 302/474 (64%) Transmembrane amino acid transporter family protein | chr2:17167561-17170145 REVERSE LENGTH=536