MLOC_20146 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains45.239461.898860.436458.2946
LEAShoots from the seedlings (10 cm shoot stage)12.379511.264113.751411.1431
INF1Young developing inflorescences (5mm)14.24915.071618.256113.6255
INF2Developing inflorescences (1-1.5 cm)21.183519.689323.180822.9507
ROORoots from the seedlings (10 cm shoot stage)22.934921.376725.472827.7021
NODDeveloping tillers at six leaf stage, 3rd internode42.071841.16948.9614145.349
CAR5Developing grain, bracts removed (5 DPA)34.593630.151434.684432.008
CAR15Developing grain, bracts removed (15 DPA)10.796511.786412.21826.3959



CDS Structure of MLOC_20146






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20146.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354555NoneNoneNoneNone
MLOC_20146.1CUST_1894_PI427708080AvailableAvailablecontig_158825 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g44660.1 +3 0.0 983 497/562 (88%) 13107.m04702 protein FGGY family of carbohydrate kinases, putative, expressed
TAIR PP10 AT5G49650.1 +3 0.0 770 387/555 (70%) | Symbols: XK-2, XK2 | xylulose kinase-2 | chr5:20152898-20155574 FORWARD LENGTH=558