MLOC_2011 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.8803511.34616.995929.82573
LEAShoots from the seedlings (10 cm shoot stage)3.805321.365523.499462.69343
INF1Young developing inflorescences (5mm)11.186212.307816.308711.2129
INF2Developing inflorescences (1-1.5 cm)14.957512.59229.272714.3088
ROORoots from the seedlings (10 cm shoot stage)5.740944.644315.986466.19942
NODDeveloping tillers at six leaf stage, 3rd internode0.3065142.334111.991467.74564
CAR5Developing grain, bracts removed (5 DPA)6.545476.100825.752316.07387
CAR15Developing grain, bracts removed (15 DPA)3.198833.414455.845968.88577



CDS Structure of MLOC_2011






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_2011.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_2011.1CUST_2896_PI427708083AvailableAvailablecontig_117885 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g08060.1 +2 3e-44 90 43/45 (96%) 13103.m30165 protein elongation factor Tu, putative, expressed
TAIR PP10 AT5G60390.3 +2 1e-42 89 43/45 (96%) GTP binding Elongation factor Tu family protein | chr5:24289226-24290675 FORWARD LENGTH=449