MLOC_20083 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.002581.270481.145231.2577
LEAShoots from the seedlings (10 cm shoot stage)0.4299950.3651160.5483720.453989
INF1Young developing inflorescences (5mm)0.9466860.7183251.218710.886019
INF2Developing inflorescences (1-1.5 cm)0.8846940.9576060.7788491.08465
ROORoots from the seedlings (10 cm shoot stage)0.3195140.533710.6760610.680979
NODDeveloping tillers at six leaf stage, 3rd internode0.6453170.4356050.4800141.49584
CAR5Developing grain, bracts removed (5 DPA)2.419763.322193.125663.13501
CAR15Developing grain, bracts removed (15 DPA)2.340262.656932.492176.02936



CDS Structure of MLOC_20083






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20083.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK360291NoneNoneNoneNone
MLOC_20083.1CUST_1891_PI427708080AvailableAvailablecontig_158794 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g46610.1 +3 0.0 647 326/396 (82%) 13103.m05016 protein DEAD-box ATP-dependent RNA helicase, putative, expressed
TAIR PP10 AT5G60990.1 +3 0.0 533 263/406 (65%) DEA(D/H)-box RNA helicase family protein | chr5:24546601-24549148 REVERSE LENGTH=456