MLOC_20078 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.443571.561261.655351.59907
LEAShoots from the seedlings (10 cm shoot stage)125.628248.009275.357181.995
INF1Young developing inflorescences (5mm)0.802660.7961490.6597720.686897
INF2Developing inflorescences (1-1.5 cm)0.7588880.9593330.6503540.925908
ROORoots from the seedlings (10 cm shoot stage)00.2050850.1611640.351307
NODDeveloping tillers at six leaf stage, 3rd internode27.928821.054426.118465.8771
CAR5Developing grain, bracts removed (5 DPA)7.940619.9153110.96789.77368
CAR15Developing grain, bracts removed (15 DPA)2.702863.333982.800717.37718



CDS Structure of MLOC_20078






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20078.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK360310NoneNoneNoneNone
MLOC_20078.1CUST_1890_PI427708080AvailableAvailablecontig_1587908 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g28090.1 +1 1e-72 226 135/198 (68%) 13105.m02889 protein expressed protein
TAIR PP10 AT1G70760.1 +1 8e-32 119 47/81 (58%) | Symbols: CRR23 | inorganic carbon transport protein-related | chr1:26687267-26688201 FORWARD LENGTH=191