MLOC_20061 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains26.108440.418254.494436.8217
LEAShoots from the seedlings (10 cm shoot stage)164.903131.7598.6179106.026
INF1Young developing inflorescences (5mm)45.321923.512115.037423.9235
INF2Developing inflorescences (1-1.5 cm)27.535326.666928.675229.3102
ROORoots from the seedlings (10 cm shoot stage)18.78250.777724.829447.4484
NODDeveloping tillers at six leaf stage, 3rd internode263.167115.945201.925393.579
CAR5Developing grain, bracts removed (5 DPA)320.045347.671289.758295.971
CAR15Developing grain, bracts removed (15 DPA)13.454813.439115.709529.9804



CDS Structure of MLOC_20061






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20061.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20061.2CUST_2889_PI427708083AvailableAvailablecontig_1587796 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g20380.8 +1 4e-24 96 48/50 (96%) 13103.m12974 protein CAMK_KIN1/SNF1/Nim1_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
TAIR PP10 AT2G26980.2 +1 1e-14 69 32/39 (82%) | Symbols: CIPK3 | CBL-interacting protein kinase 3 | chr2:11515626-11518205 REVERSE LENGTH=375