MLOC_20051 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains56.500839.646137.74445.789
LEAShoots from the seedlings (10 cm shoot stage)19.409813.094522.882816.484
INF1Young developing inflorescences (5mm)34.518840.377141.552634.4481
INF2Developing inflorescences (1-1.5 cm)28.239726.268227.424831.245
ROORoots from the seedlings (10 cm shoot stage)50.560329.894135.360342.2866
NODDeveloping tillers at six leaf stage, 3rd internode5.366497.9346710.359226.4096
CAR5Developing grain, bracts removed (5 DPA)18.865120.323821.402420.8572
CAR15Developing grain, bracts removed (15 DPA)7.864738.580957.7612319.488



CDS Structure of MLOC_20051






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20051.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373418NoneNoneNoneNone
MLOC_20051.2CUST_1886_PI427708080AvailableAvailablecontig_158775 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g61019.1 -3 1e-40 135 63/79 (80%) 13103.m06704 protein mitochondrial import inner membrane translocase subunit Tim, putative, expressed
TAIR PP10 AT2G29530.2 -3 7e-31 109 48/66 (73%) | Symbols: TIM10 | Tim10/DDP family zinc finger protein | chr2:12641026-12642243 REVERSE LENGTH=83