MLOC_20017 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains23.0714.964716.566716.3374
LEAShoots from the seedlings (10 cm shoot stage)16.712916.70121.752614.3305
INF1Young developing inflorescences (5mm)10.842711.49399.389017.99072
INF2Developing inflorescences (1-1.5 cm)7.7631211.32098.956719.09788
ROORoots from the seedlings (10 cm shoot stage)21.687519.924516.127521.0613
NODDeveloping tillers at six leaf stage, 3rd internode17.213818.931220.934556.7898
CAR5Developing grain, bracts removed (5 DPA)12.348514.795213.98311.5591
CAR15Developing grain, bracts removed (15 DPA)25.157824.664824.768347.5378



CDS Structure of MLOC_20017






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20017.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365095NoneNoneNoneNone
MLOC_20017.2CUST_154_PI427708083AvailableAvailablecontig_158762 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g29610.1 -3 2e-109 329 179/232 (77%) 13107.m02976 protein PQ loop repeat domain containing protein, expressed
TAIR PP10 AT4G07390.1 -3 6e-88 272 142/219 (65%) Mannose-P-dolichol utilization defect 1 protein | chr4:4195750-4197317 FORWARD LENGTH=235