- Predicted Gene MLOC_20002
MLOC_20002 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 10.5759 | 11.13 | 9.69744 | 8.36418 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 14.8548 | 9.06616 | 10.4674 | 8.33085 |
| INF1 | Young developing inflorescences (5mm) | 32.9405 | 27.5054 | 29.5676 | 19.1375 |
| INF2 | Developing inflorescences (1-1.5 cm) | 29.8894 | 28.6276 | 31.1371 | 25.8052 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 8.69759 | 15.3762 | 18.6607 | 12.7093 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 8.77882 | 7.24716 | 13.0925 | 22.6191 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 14.7263 | 14.0158 | 12.2144 | 10.3261 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 11.8007 | 8.53709 | 8.74643 | 17.8432 |
CDS Structure of MLOC_20002
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_20002.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os10g30370.2 |
-1 |
2e-54 |
184 |
115/137 (84%) |
13110.m02614 protein RNA recognition motif containing protein, putative, expressed |
| TAIR PP10 |
AT5G09880.1 |
-1 |
5e-31 |
122 |
79/133 (59%) |
Splicing factor, CC1-like | chr5:3081646-3085179 REVERSE LENGTH=527 |