MLOC_20002 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.575911.139.697448.36418
LEAShoots from the seedlings (10 cm shoot stage)14.85489.0661610.46748.33085
INF1Young developing inflorescences (5mm)32.940527.505429.567619.1375
INF2Developing inflorescences (1-1.5 cm)29.889428.627631.137125.8052
ROORoots from the seedlings (10 cm shoot stage)8.6975915.376218.660712.7093
NODDeveloping tillers at six leaf stage, 3rd internode8.778827.2471613.092522.6191
CAR5Developing grain, bracts removed (5 DPA)14.726314.015812.214410.3261
CAR15Developing grain, bracts removed (15 DPA)11.80078.537098.7464317.8432



CDS Structure of MLOC_20002






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_20002.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_20002.1CUST_11637_PI427708083AvailableAvailablecontig_1587536 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g30370.2 -1 2e-54 184 115/137 (84%) 13110.m02614 protein RNA recognition motif containing protein, putative, expressed
TAIR PP10 AT5G09880.1 -1 5e-31 122 79/133 (59%) Splicing factor, CC1-like | chr5:3081646-3085179 REVERSE LENGTH=527