MLOC_19984 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)000.1572560.155044
INF1Young developing inflorescences (5mm)0.20219800.1264450.138794
INF2Developing inflorescences (1-1.5 cm)0.17914500.1201220.211594
ROORoots from the seedlings (10 cm shoot stage)0.389248000.448131
NODDeveloping tillers at six leaf stage, 3rd internode0.08898460.11722500.534838
CAR5Developing grain, bracts removed (5 DPA)0.10781200.3486790.247926
CAR15Developing grain, bracts removed (15 DPA)00.10703200.293453



CDS Structure of MLOC_19984






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19984.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_19984.1CUST_2874_PI427708083AvailableAvailablecontig_1587448 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g42234.1 -2 3e-54 188 84/123 (68%) 13107.m04409 protein retrotransposon protein, putative, unclassified
TAIR PP10 AT4G29090.1 -2 3e-30 116 49/112 (44%) Ribonuclease H-like superfamily protein | chr4:14333528-14335255 FORWARD LENGTH=575