MLOC_19955 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.870316.755087.495767.83468
LEAShoots from the seedlings (10 cm shoot stage)2.625322.836913.438992.75499
INF1Young developing inflorescences (5mm)9.6911410.56558.862718.79269
INF2Developing inflorescences (1-1.5 cm)7.482978.26816.640319.06419
ROORoots from the seedlings (10 cm shoot stage)3.867156.042565.527457.74696
NODDeveloping tillers at six leaf stage, 3rd internode0.3434820.587940.8486492.31334
CAR5Developing grain, bracts removed (5 DPA)6.621097.38287.369657.75025
CAR15Developing grain, bracts removed (15 DPA)2.378371.958551.790565.15511



CDS Structure of MLOC_19955






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19955.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370050NoneNoneNoneNone
MLOC_19955.1CUST_1876_PI427708080AvailableAvailablecontig_158734 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g40750.1 +3 0.0 811 396/477 (83%) 13107.m04239 protein PPR repeat domain containing protein, putative, expressed
TAIR PP10 AT4G21705.1 +3 2e-142 426 216/450 (48%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11533257-11534817 REVERSE LENGTH=492