MLOC_19934 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.764729.950188.554218.06586
LEAShoots from the seedlings (10 cm shoot stage)8.201256.751085.507695.39816
INF1Young developing inflorescences (5mm)32.294535.402232.677624.6761
INF2Developing inflorescences (1-1.5 cm)30.770434.50329.948231.3572
ROORoots from the seedlings (10 cm shoot stage)4.496038.757545.551648.19982
NODDeveloping tillers at six leaf stage, 3rd internode1.315692.108594.029837.38797
CAR5Developing grain, bracts removed (5 DPA)20.311818.836321.184717.1166
CAR15Developing grain, bracts removed (15 DPA)5.256965.351284.6333210.3766



CDS Structure of MLOC_19934






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19934.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_19934.1CUST_9840_PI427708080AvailableAvailablecontig_158724 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g26160.2 -3 0.0 680 370/450 (82%) 13101.m02770 protein exportin 1, putative, expressed
TAIR PP10 AT3G05040.1 -3 6e-145 449 262/475 (55%) | Symbols: HST, HST1 | ARM repeat superfamily protein | chr3:1401479-1408095 REVERSE LENGTH=1202