MLOC_19924 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains89.569157.911463.621280.3538
LEAShoots from the seedlings (10 cm shoot stage)52.820462.9096100.85571.1567
INF1Young developing inflorescences (5mm)46.248449.365547.620148.6267
INF2Developing inflorescences (1-1.5 cm)41.641150.048148.224263.7319
ROORoots from the seedlings (10 cm shoot stage)99.027364.516562.521100.438
NODDeveloping tillers at six leaf stage, 3rd internode60.091559.979924.6853180.27
CAR5Developing grain, bracts removed (5 DPA)77.6979.783774.462297.4395
CAR15Developing grain, bracts removed (15 DPA)4.960895.150685.8930214.9554



CDS Structure of MLOC_19924






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19924.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357660NoneNoneNoneNone
MLOC_19924.1CUST_1871_PI427708080AvailableAvailablecontig_158718 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g48780.1 +2 3e-101 298 149/149 (100%) 13107.m05229 protein OsCam1-2 - Calmodulin, expressed
TAIR PP10 AT3G43810.1 +2 4e-101 296 148/149 (99%) | Symbols: CAM7 | calmodulin 7 | chr3:15664619-15666355 REVERSE LENGTH=149