MLOC_19902 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains560.127407.364382.282455.562
LEAShoots from the seedlings (10 cm shoot stage)182.55109.042169.053125.566
INF1Young developing inflorescences (5mm)622.4627.085662.215596.04
INF2Developing inflorescences (1-1.5 cm)491.486425.136449.953559.424
ROORoots from the seedlings (10 cm shoot stage)379.902325.121447.333434.579
NODDeveloping tillers at six leaf stage, 3rd internode45.875237.2005106.052143.958
CAR5Developing grain, bracts removed (5 DPA)224.488233.418246.699267.453
CAR15Developing grain, bracts removed (15 DPA)106.393105.2293.6523283.701



CDS Structure of MLOC_19902






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19902.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249807.1NoneNoneNoneNone
MLOC_19902.1CUST_6929_PI427708080AvailableAvailablecontig_158707 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g07580.2 +3 4e-37 125 60/62 (97%) 13106.m00790 protein expressed protein
TAIR PP10 AT5G56670.1 +3 7e-37 124 59/62 (95%) Ribosomal protein S30 family protein | chr5:22935413-22935981 REVERSE LENGTH=62