MLOC_19842 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.86556.6883213.85498.80675
LEAShoots from the seedlings (10 cm shoot stage)5.411788.3054213.00675.7245
INF1Young developing inflorescences (5mm)3.266043.437734.496352.34694
INF2Developing inflorescences (1-1.5 cm)1.795162.017571.257831.61521
ROORoots from the seedlings (10 cm shoot stage)18.79886.155877.72518.78292
NODDeveloping tillers at six leaf stage, 3rd internode7.06269.4538812.754725.0474
CAR5Developing grain, bracts removed (5 DPA)5.433526.45196.801544.83293
CAR15Developing grain, bracts removed (15 DPA)1.767161.297281.873242.99706



CDS Structure of MLOC_19842






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19842.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_19842.1CUST_11628_PI427708083AvailableAvailablecontig_1586750 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g06720.1 -1 5e-58 191 92/109 (84%) 13106.m00694 protein flavonol synthase/flavanone 3-hydroxylase, putative, expressed
TAIR PP10 AT4G16330.1 -1 5e-45 153 72/109 (66%) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:9226298-9227235 REVERSE LENGTH=258