MLOC_19815 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains77.6876119.011101.72191.8785
LEAShoots from the seedlings (10 cm shoot stage)69.568762.805362.251445.6484
INF1Young developing inflorescences (5mm)79.571578.224169.312162.4451
INF2Developing inflorescences (1-1.5 cm)79.416576.951867.678779.6656
ROORoots from the seedlings (10 cm shoot stage)53.644396.797975.091685.5204
NODDeveloping tillers at six leaf stage, 3rd internode65.492630.746319.88258.6264
CAR5Developing grain, bracts removed (5 DPA)55.83868.291961.943958.5683
CAR15Developing grain, bracts removed (15 DPA)9.6589110.495810.592422.7569



CDS Structure of MLOC_19815






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19815.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_19815.1CUST_11627_PI427708083AvailableAvailablecontig_158660 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g43730.1 +2 2e-12 66 35/40 (88%) 13112.m04613 protein expressed protein
TAIR PP10 AT5G09550.1 +2 1e-11 62 30/30 (100%) GDP dissociation inhibitor family protein / Rab GTPase activator family protein | chr5:2963850-2966465 FORWARD LENGTH=445