MLOC_19810 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.100880.7956540.5126950.782171
LEAShoots from the seedlings (10 cm shoot stage)0.6051560.43680.4770710.407325
INF1Young developing inflorescences (5mm)1.156681.379122.005671.14297
INF2Developing inflorescences (1-1.5 cm)1.64631.772591.71411.73262
ROORoots from the seedlings (10 cm shoot stage)0.1474320.4340450.2438720.392424
NODDeveloping tillers at six leaf stage, 3rd internode0.1631270.3477260.7923731.17053
CAR5Developing grain, bracts removed (5 DPA)0.990310.8339080.9523740.814533
CAR15Developing grain, bracts removed (15 DPA)0.3665770.3308870.3218970.741158



CDS Structure of MLOC_19810






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19810.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_19810.1NoneAvailableAvailablecontig_158658 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g39810.1 -3 6e-134 322 158/321 (49%) 13105.m04199 protein retrotransposon protein, putative, unclassified
TAIR PP10 AT3G24255.1 -3 3e-13 74 44/139 (32%) RNA-directed DNA polymerase (reverse transcriptase)-related family protein | chr3:8789471-8793208 FORWARD LENGTH=746