MLOC_19798 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.001023.313522.704422.81297
LEAShoots from the seedlings (10 cm shoot stage)0.6685471.668970.4723710.746443
INF1Young developing inflorescences (5mm)11.17493.982892.162285.0781
INF2Developing inflorescences (1-1.5 cm)0.1356870.1509660.8819140.343658
ROORoots from the seedlings (10 cm shoot stage)3.496033.75172.702143.93716
NODDeveloping tillers at six leaf stage, 3rd internode6.592211.670221.04384.3031
CAR5Developing grain, bracts removed (5 DPA)0.9226090.1836290.1409670.400707
CAR15Developing grain, bracts removed (15 DPA)0.0454590.1278060.1315430.251753



CDS Structure of MLOC_19798






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19798.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_19798.1CUST_17587_PI427708080AvailableAvailablecontig_1586542 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g43800.1 -2 0.0 687 358/386 (93%) 13104.m04357 protein phenylalanine ammonia-lyase, putative, expressed
TAIR PP10 AT3G53260.1 -2 0.0 552 291/394 (74%) | Symbols: PAL2, ATPAL2 | phenylalanine ammonia-lyase 2 | chr3:19744256-19746619 REVERSE LENGTH=717