MLOC_19772 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1158.291152.161143.581202.47
LEAShoots from the seedlings (10 cm shoot stage)506.134474.582293.033371.532
INF1Young developing inflorescences (5mm)1351.421339.431078.641115.87
INF2Developing inflorescences (1-1.5 cm)867.679756.636775.336915.397
ROORoots from the seedlings (10 cm shoot stage)713.635680.271967.099896.189
NODDeveloping tillers at six leaf stage, 3rd internode621.191211.229257.994846.051
CAR5Developing grain, bracts removed (5 DPA)801.07885.782843.449861.031
CAR15Developing grain, bracts removed (15 DPA)276.122267.648226.427626.722



CDS Structure of MLOC_19772






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19772.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252901.1NoneNoneNoneNone
MLOC_19772.2CUST_1864_PI427708080AvailableAvailablecontig_158638 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g49890.2 -1 4e-135 394 185/189 (98%) 13105.m05345 protein ras-related protein, putative, expressed
TAIR PP10 AT5G55190.1 -1 4e-130 382 179/189 (95%) | Symbols: RAN3, ATRAN3 | RAN GTPase 3 | chr5:22392285-22393957 FORWARD LENGTH=221