MLOC_1973 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5809410.6232440.6470480.583814
LEAShoots from the seedlings (10 cm shoot stage)000.2060420.155926
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)000.04946560.0417043
ROORoots from the seedlings (10 cm shoot stage)1.839020.96706701.38757
NODDeveloping tillers at six leaf stage, 3rd internode0.1420420.43801301.26777
CAR5Developing grain, bracts removed (5 DPA)0.266160.3036690.2021590.266623
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_1973






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_1973.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_1973.1CUST_2851_PI427708083AvailableAvailablecontig_117565 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g35700.1 -3 3e-137 404 220/287 (77%) 13106.m03686 protein reticuline oxidase-like protein precursor, putative, expressed
TAIR PP10 AT5G44410.1 -3 8e-84 266 148/285 (52%) FAD-binding Berberine family protein | chr5:17891246-17892853 REVERSE LENGTH=535