- Predicted Gene MLOC_19711
MLOC_19711 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 16.6814 | 15.0654 | 18.7717 | 18.1026 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 53.3294 | 65.702 | 69.0101 | 59.3298 |
| INF1 | Young developing inflorescences (5mm) | 2.02068 | 2.45127 | 2.19896 | 2.19335 |
| INF2 | Developing inflorescences (1-1.5 cm) | 3.58306 | 2.17727 | 4.3635 | 3.886 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 120.101 | 83.5758 | 103.364 | 121.032 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 49.4672 | 44.6296 | 56.8311 | 174.344 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 10.8028 | 11.7365 | 10.0762 | 12.4013 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 6.08293 | 4.93079 | 4.83464 | 14.1753 |
CDS Structure of MLOC_19711
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_19711.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os07g10420.1 |
-3 |
4e-49 |
172 |
132/265 (50%) |
13107.m01058 protein expressed protein |
| TAIR PP10 |
AT5G18130.1 |
-3 |
5e-11 |
64 |
38/91 (42%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03870.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5995634-5997165 FORWARD LENGTH=280 |
