MLOC_19653 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.01598.147829.931398.00408
LEAShoots from the seedlings (10 cm shoot stage)13.063317.809917.841112.4584
INF1Young developing inflorescences (5mm)5.040497.889088.060844.94425
INF2Developing inflorescences (1-1.5 cm)3.426573.188093.596753.24153
ROORoots from the seedlings (10 cm shoot stage)23.898522.645725.278425.7628
NODDeveloping tillers at six leaf stage, 3rd internode32.66132.239438.3387104.232
CAR5Developing grain, bracts removed (5 DPA)9.831558.8414110.51798.28817
CAR15Developing grain, bracts removed (15 DPA)8.825647.975777.532217.9995



CDS Structure of MLOC_19653






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19653.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251975.1NoneNoneNoneNone
MLOC_19653.2CUST_1861_PI427708080AvailableAvailablecontig_158583 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g35020.2 +1 3e-66 214 98/106 (92%) 13111.m09171 protein yippee zinc-binding protein, putative, expressed
TAIR PP10 AT4G27745.1 +1 8e-56 186 85/106 (80%) Yippee family putative zinc-binding protein | chr4:13840530-13841279 FORWARD LENGTH=106