MLOC_19618 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains19.04226.676624.684631.294
LEAShoots from the seedlings (10 cm shoot stage)19.201413.11727.8079612.226
INF1Young developing inflorescences (5mm)46.604247.90848.967550.9407
INF2Developing inflorescences (1-1.5 cm)47.487351.849453.676570.9486
ROORoots from the seedlings (10 cm shoot stage)16.928923.214626.424231.7044
NODDeveloping tillers at six leaf stage, 3rd internode31.397537.930116.678897.8224
CAR5Developing grain, bracts removed (5 DPA)15.588814.742915.122718.8028
CAR15Developing grain, bracts removed (15 DPA)2.526471.547612.587726.29315



CDS Structure of MLOC_19618






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_19618.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_19618.2CUST_11621_PI427708083AvailableAvailablecontig_1585699 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g39090.1 +1 0.0 538 265/276 (96%) 13105.m04114 protein CAMK_CAMK_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
TAIR PP10 AT3G51850.1 +1 1e-166 477 230/258 (89%) | Symbols: CPK13 | calcium-dependent protein kinase 13 | chr3:19232667-19235526 FORWARD LENGTH=528